Arrakis
v2.3.5
Contents:
Installation
Parallelisation
Getting started
Running the pipeline
Imaging
Acknowledging
Changelog
API Reference
Arrakis
Index
Edit on GitHub
Index
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A
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B
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C
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D
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E
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F
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G
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H
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I
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L
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M
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N
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O
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P
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Q
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R
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S
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T
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U
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V
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W
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X
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Y
|
Z
_
__aenter__() (arrakis.utils.pipeline.performance_report_prefect method)
__aexit__() (arrakis.utils.pipeline.performance_report_prefect method)
__author__ (in module arrakis)
__enter__() (arrakis.utils.pipeline.performance_report_prefect method)
__exit__() (arrakis.utils.pipeline.performance_report_prefect method)
__version__ (in module arrakis)
_clean_loop() (in module arrakis.wsclean_rmsynth)
_draw_bar() (arrakis.utils.pipeline.TqdmProgressBar method)
_draw_stop() (arrakis.utils.pipeline.TqdmProgressBar method)
_gauss() (in module arrakis.wsclean_rmsynth)
_samefile() (in module arrakis.utils.io)
A
add_metadata() (in module arrakis.makecat)
(in module fix_src_cat)
alpha (arrakis.rmsynth_oncuts.StokesIFitResult attribute)
alphas (arrakis.makecat.SpectralIndices attribute)
alphas_err (arrakis.makecat.SpectralIndices attribute)
amplitude (arrakis.rmsynth_oncuts.StokesIFitResult attribute)
arrakis
module
arrakis.cleanup
module
arrakis.columns_possum
module
arrakis.cutout
module
arrakis.data
module
arrakis.frion
module
arrakis.imager
module
arrakis.init_database
module
arrakis.linmos
module
arrakis.logger
module
arrakis.makecat
module
arrakis.merge_fields
module
arrakis.process_region
module
arrakis.process_spice
module
arrakis.rmclean_oncuts
module
arrakis.rmsynth_oncuts
module
arrakis.utils
module
arrakis.utils.coordinates
module
arrakis.utils.database
module
arrakis.utils.exceptions
module
arrakis.utils.fitsutils
module
arrakis.utils.fitting
module
arrakis.utils.io
module
arrakis.utils.json
module
arrakis.utils.meta
module
arrakis.utils.msutils
module
arrakis.utils.pipeline
module
arrakis.utils.plotting
module
arrakis.utils.typing
module
arrakis.validate
module
arrakis.wsclean_rmsynth
module
ArrayLike (in module arrakis.utils.typing)
aux_lists (arrakis.imager.ImageSet attribute)
ays (arrakis.wsclean_rmsynth.RMSynthParams attribute)
B
beam_database() (in module arrakis.init_database)
beam_from_ms() (in module arrakis.utils.msutils)
beam_inf() (in module arrakis.init_database)
best_aic_func() (in module arrakis.utils.fitting)
betas (arrakis.makecat.SpectralIndices attribute)
betas_err (arrakis.makecat.SpectralIndices attribute)
big_cutout() (in module arrakis.cutout)
BinnedMap (class in arrakis.validate)
bkg (arrakis.rmsynth_oncuts.Spectrum attribute)
blue (arrakis.logger.CustomFormatter attribute)
bold_red (arrakis.logger.CustomFormatter attribute)
buf (arrakis.logger.TqdmToLogger attribute)
C
casda_prepare
module
cat2beams() (in module arrakis.init_database)
cat_parser() (in module arrakis.makecat)
check_cutout
module
chi_squared() (in module arrakis.utils.fitting)
chunk_dask() (in module arrakis.utils.pipeline)
class_for_name() (in module arrakis.utils.meta)
clean_parser() (in module arrakis.rmclean_oncuts)
cleanup() (in module arrakis.imager)
cleanup_imageset() (in module arrakis.imager)
cleanup_parser() (in module arrakis.cleanup)
cli() (in module arrakis.cleanup)
(in module arrakis.cutout)
(in module arrakis.frion)
(in module arrakis.imager)
(in module arrakis.init_database)
(in module arrakis.linmos)
(in module arrakis.makecat)
(in module arrakis.merge_fields)
(in module arrakis.process_region)
(in module arrakis.process_spice)
(in module arrakis.rmclean_oncuts)
(in module arrakis.rmsynth_oncuts)
(in module arrakis.validate)
(in module casda_prepare)
(in module check_cutout)
(in module compare_leakage)
(in module compute_leakage)
(in module copy_cutouts)
(in module copy_cutouts_askap)
(in module copy_data)
(in module create_mongodb)
(in module find_row)
(in module find_sbid)
(in module fix_dr1_cat)
(in module fix_src_cat)
(in module hello_mpi_world)
(in module make_links)
(in module spica)
columns (in module arrakis.columns_possum)
combinate() (in module arrakis.makecat)
compare_leakage
module
compute_leakage
module
compute_local_rm_flag() (in module arrakis.makecat)
convert_pdf() (in module casda_prepare)
convert_spectra() (in module casda_prepare)
coord_to_string() (in module arrakis.utils.coordinates)
copy_cutouts
module
copy_cutouts_askap
module
copy_data
module
copy_singleton() (in module arrakis.merge_fields)
copy_singletons() (in module arrakis.merge_fields)
copyfile() (in module arrakis.utils.io)
copyfileobj() (in module arrakis.utils.io)
correct_worker() (in module arrakis.frion)
correction (arrakis.frion.FrionResults attribute)
cpu_to_use() (in module arrakis.utils.pipeline)
create_admin_user() (in module create_mongodb)
create_dask_runner() (in module arrakis.process_spice)
create_mongodb
module
create_or_update_user() (in module create_mongodb)
create_read_only_user() (in module create_mongodb)
cross_match() (in module arrakis.validate)
cubelet_bane() (in module arrakis.rmsynth_oncuts)
curved_power_law() (in module arrakis.utils.fitting)
CustomFormatter (class in arrakis.logger)
cutout_image() (in module arrakis.cutout)
cutout_islands() (in module arrakis.cutout)
cutout_parser() (in module arrakis.cutout)
cutout_weight() (in module arrakis.cutout)
CutoutArgs (class in arrakis.cutout)
cuts_and_flags() (in module arrakis.makecat)
D
data (arrakis.rmsynth_oncuts.Spectrum attribute)
(arrakis.validate.BinnedMap attribute)
(arrakis.validate.GriddedMap attribute)
dec_high (arrakis.cutout.CutoutArgs attribute)
dec_low (arrakis.cutout.CutoutArgs attribute)
deconvolve() (in module arrakis.wsclean_rmsynth)
default() (arrakis.utils.json.MyEncoder method)
deg_to_dms() (in module arrakis.utils.coordinates)
deg_to_hms() (in module arrakis.utils.coordinates)
delayed_to_da() (in module arrakis.utils.pipeline)
E
Error
ExecError
extra_column_descriptions (in module arrakis.columns_possum)
extract_all_spectra() (in module arrakis.rmsynth_oncuts)
extract_single_spectrum() (in module arrakis.rmsynth_oncuts)
F
field_database() (in module arrakis.init_database)
field_idx_from_ms() (in module arrakis.utils.msutils)
field_name_from_ms() (in module arrakis.utils.msutils)
filename (arrakis.rmsynth_oncuts.Spectrum attribute)
filter_then_median() (in module arrakis.validate)
find_cubes() (in module casda_prepare)
find_images() (in module arrakis.linmos)
find_plots() (in module casda_prepare)
find_row
module
find_sbid
module
find_spectra() (in module casda_prepare)
fit_dict (arrakis.rmsynth_oncuts.StokesIFitResult attribute)
fit_pl() (in module arrakis.utils.fitting)
fit_stokes_I() (in module arrakis.rmsynth_oncuts)
fitted_mean() (in module arrakis.utils.fitting)
fitted_std() (in module arrakis.utils.fitting)
fix_blank_units() (in module arrakis.makecat)
fix_dr1_cat
module
fix_fields() (in module fix_dr1_cat)
fix_header() (in module arrakis.utils.fitsutils)
fix_ms() (in module arrakis.imager)
fix_ms_askap_corrs() (in module arrakis.imager)
fix_src_cat
module
flag_blended_components() (in module arrakis.makecat)
flat_power_law() (in module arrakis.utils.fitting)
flush() (arrakis.logger.TqdmToLogger method)
format() (arrakis.logger.CustomFormatter method)
format_str (arrakis.logger.CustomFormatter attribute)
FORMATS (arrakis.logger.CustomFormatter attribute)
frion_parser() (in module arrakis.frion)
FrionResults (class in arrakis.frion)
fwhm (arrakis.wsclean_rmsynth.RMSynthParams attribute)
G
generic_parser() (in module arrakis.utils.pipeline)
genparset() (in module arrakis.linmos)
(in module arrakis.merge_fields)
get_alpha() (in module arrakis.makecat)
get_args() (in module arrakis.cutout)
get_arrakis_logger() (in module arrakis.logger)
get_beam() (in module arrakis.imager)
get_beam_inf_db() (in module arrakis.utils.database)
get_beams() (in module arrakis.init_database)
get_catalogue() (in module arrakis.init_database)
get_db() (in module arrakis.utils.database)
get_field_db() (in module arrakis.utils.database)
get_fit_func() (in module arrakis.makecat)
get_integration_time() (in module arrakis.makecat)
get_mfs_image() (in module arrakis.imager)
get_pol_axis() (in module arrakis.utils.msutils)
get_prefix() (in module arrakis.imager)
get_rmsynth_params() (in module arrakis.wsclean_rmsynth)
get_wsclean() (in module arrakis.imager)
get_yanda() (in module arrakis.linmos)
getdata() (in module arrakis.utils.fitsutils)
getfreq() (in module arrakis.utils.fitsutils)
gettable() (in module arrakis.utils.io)
green (arrakis.logger.CustomFormatter attribute)
grey (arrakis.logger.CustomFormatter attribute)
GriddedMap (class in arrakis.validate)
group_area (in module copy_cutouts)
(in module copy_cutouts_askap)
(in module spica)
H
head2dict() (in module arrakis.utils.fitsutils)
header (arrakis.rmsynth_oncuts.Spectrum attribute)
hello_mpi_world
module
I
i (arrakis.rmsynth_oncuts.StokesSpectra attribute)
image (arrakis.imager.MFSImage attribute)
image_beam() (in module arrakis.imager)
image_lists (arrakis.imager.ImageSet attribute)
ImagePaths (class in arrakis.linmos)
imager_parser() (in module arrakis.imager)
images (arrakis.linmos.ImagePaths attribute)
ImageSet (class in arrakis.imager)
index_beams() (in module arrakis.frion)
init_polspec() (in module casda_prepare)
input_names (in module arrakis.columns_possum)
input_sources (in module arrakis.columns_possum)
inspect_client() (in module arrakis.utils.pipeline)
interpolate() (in module compare_leakage)
is_leakage() (in module arrakis.makecat)
L
latexify() (in module arrakis.utils.plotting)
level (arrakis.logger.TqdmToLogger attribute)
linmos() (in module arrakis.linmos)
linmos_parser() (in module arrakis.linmos)
logger (arrakis.logger.TqdmToLogger attribute)
(in module arrakis.logger)
lognorm_from_percentiles() (in module arrakis.makecat)
logo_str (in module arrakis.utils.pipeline)
lsq (arrakis.wsclean_rmsynth.RMSynthParams attribute)
lsq_0 (arrakis.wsclean_rmsynth.RMSynthParams attribute)
M
main() (in module arrakis.cleanup)
(in module arrakis.cutout)
(in module arrakis.frion)
(in module arrakis.imager)
(in module arrakis.init_database)
(in module arrakis.linmos)
(in module arrakis.makecat)
(in module arrakis.merge_fields)
(in module arrakis.process_region)
(in module arrakis.process_spice)
(in module arrakis.rmclean_oncuts)
(in module arrakis.rmsynth_oncuts)
(in module arrakis.validate)
(in module casda_prepare)
(in module check_cutout)
(in module compare_leakage)
(in module compute_leakage)
(in module copy_cutouts)
(in module copy_cutouts_askap)
(in module copy_data)
(in module create_mongodb)
(in module find_row)
(in module find_sbid)
(in module fix_dr1_cat)
(in module fix_src_cat)
(in module hello_mpi_world)
(in module make_links)
(in module spica)
(in module tar_cubelets)
make_binned_map() (in module arrakis.validate)
make_cube() (in module arrakis.imager)
make_cutout_tarball() (in module arrakis.cleanup)
make_gridded_map() (in module arrakis.validate)
make_links
module
make_plot() (in module compare_leakage)
make_short_name() (in module arrakis.merge_fields)
make_thumbnail() (in module casda_prepare)
make_validation_plots() (in module arrakis.imager)
makesurf() (in module compute_leakage)
merge_multiple_field() (in module arrakis.merge_fields)
merge_multiple_fields() (in module arrakis.merge_fields)
merge_parser() (in module arrakis.merge_fields)
MFSImage (class in arrakis.imager)
model (arrakis.imager.MFSImage attribute)
model_repr (arrakis.rmsynth_oncuts.StokesIFitResult attribute)
modStokesI (arrakis.rmsynth_oncuts.StokesIFitResult attribute)
module
arrakis
arrakis.cleanup
arrakis.columns_possum
arrakis.cutout
arrakis.data
arrakis.frion
arrakis.imager
arrakis.init_database
arrakis.linmos
arrakis.logger
arrakis.makecat
arrakis.merge_fields
arrakis.process_region
arrakis.process_spice
arrakis.rmclean_oncuts
arrakis.rmsynth_oncuts
arrakis.utils
arrakis.utils.coordinates
arrakis.utils.database
arrakis.utils.exceptions
arrakis.utils.fitsutils
arrakis.utils.fitting
arrakis.utils.io
arrakis.utils.json
arrakis.utils.meta
arrakis.utils.msutils
arrakis.utils.pipeline
arrakis.utils.plotting
arrakis.utils.typing
arrakis.validate
arrakis.wsclean_rmsynth
casda_prepare
check_cutout
compare_leakage
compute_leakage
copy_cutouts
copy_cutouts_askap
copy_data
create_mongodb
find_row
find_sbid
fix_dr1_cat
fix_src_cat
hello_mpi_world
make_links
spica
tar_cubelets
MongodError
ms (arrakis.imager.ImageSet attribute)
mslist() (in module spica)
my_ceil() (in module arrakis.utils.meta)
my_floor() (in module arrakis.utils.meta)
MyEncoder (class in arrakis.utils.json)
N
ndix_unique() (in module arrakis.init_database)
O
outdir (arrakis.cutout.CutoutArgs attribute)
output_cols (in module arrakis.columns_possum)
output_types (in module arrakis.columns_possum)
output_units (in module arrakis.columns_possum)
P
parse_env_path() (in module arrakis.utils.io)
parser (in module tar_cubelets)
PathLike (in module arrakis.utils.typing)
performance_report_prefect (class in arrakis.utils.pipeline)
phis (arrakis.wsclean_rmsynth.RMSynthParams attribute)
phis_double (arrakis.wsclean_rmsynth.RMSynthParams attribute)
pipeline_parser() (in module arrakis.process_region)
(in module arrakis.process_spice)
plot_comp() (in module check_cutout)
plot_leakage() (in module arrakis.validate)
plot_rm() (in module arrakis.validate)
plot_rms_bkg() (in module arrakis.validate)
port_forward() (in module arrakis.utils.pipeline)
power_law() (in module arrakis.utils.fitting)
predict_file (arrakis.frion.Prediction attribute)
predict_worker() (in module arrakis.frion)
prediction (arrakis.frion.FrionResults attribute)
Prediction (class in arrakis.frion)
prefix (arrakis.imager.ImageSet attribute)
process_merge() (in module arrakis.process_region)
process_spice() (in module arrakis.process_spice)
proper_rm_clean() (in module arrakis.wsclean_rmsynth)
prsync() (in module arrakis.utils.io)
purge_cubelet_beams() (in module arrakis.cleanup)
Q
q (arrakis.rmsynth_oncuts.StokesSpectra attribute)
R
ra_left (arrakis.cutout.CutoutArgs attribute)
ra_right (arrakis.cutout.CutoutArgs attribute)
racs_area (in module copy_cutouts)
(in module spica)
read_racs_database() (in module arrakis.init_database)
ReadError
red (arrakis.logger.CustomFormatter attribute)
RegistryError
replace_nans() (in module arrakis.makecat)
reset (arrakis.logger.CustomFormatter attribute)
residual (arrakis.imager.MFSImage attribute)
rm_common_parser() (in module arrakis.rmsynth_oncuts)
rmclean1d() (in module arrakis.rmclean_oncuts)
rmclean3d() (in module arrakis.rmclean_oncuts)
rms (arrakis.rmsynth_oncuts.Spectrum attribute)
rmsf (arrakis.wsclean_rmsynth.RMSynthParams attribute)
rmsynth2d() (in module arrakis.wsclean_rmsynth)
rmsynth3d() (in module arrakis.wsclean_rmsynth)
rmsynth_1d() (in module arrakis.wsclean_rmsynth)
rmsynth_parser() (in module arrakis.rmsynth_oncuts)
rmsynthoncut1d() (in module arrakis.rmsynth_oncuts)
rmsynthoncut3d() (in module arrakis.rmsynth_oncuts)
RMSynthParams (class in arrakis.wsclean_rmsynth)
rsync() (in module arrakis.utils.io)
S
SameFileError
save_args() (in module arrakis.process_spice)
serial_loop() (in module arrakis.frion)
(in module arrakis.linmos)
sigma_add_fix() (in module arrakis.makecat)
sigma_clip_spectra() (in module arrakis.rmsynth_oncuts)
simple_clean() (in module arrakis.wsclean_rmsynth)
smooth_images() (in module arrakis.linmos)
smooth_imageset() (in module arrakis.imager)
sorted_sbids (in module find_sbid)
sorted_weights (in module find_sbid)
source2beams() (in module arrakis.init_database)
source_database() (in module arrakis.init_database)
sourcefinder_columns (in module arrakis.columns_possum)
SpecialFileError
SpectralIndices (class in arrakis.makecat)
Spectrum (class in arrakis.rmsynth_oncuts)
spica
module
SPICA (in module spica)
spice_area (in module copy_cutouts)
(in module copy_cutouts_askap)
(in module spica)
start_mongod() (in module create_mongodb)
StokesIFitResult (class in arrakis.rmsynth_oncuts)
StokesSpectra (class in arrakis.rmsynth_oncuts)
stop_mongod() (in module create_mongodb)
SUPPORTED_IMAGE_TYPES (in module arrakis.utils.pipeline)
T
T (in module arrakis.cutout)
(in module arrakis.utils.typing)
TableLike (in module arrakis.utils.typing)
tar_cubelets
module
tar_cubelets() (in module tar_cubelets)
test_db() (in module arrakis.utils.database)
tqdm_dask() (in module arrakis.utils.pipeline)
TQDM_OUT (in module arrakis.cleanup)
(in module arrakis.cutout)
(in module arrakis.frion)
(in module arrakis.imager)
(in module arrakis.init_database)
(in module arrakis.linmos)
(in module arrakis.makecat)
(in module arrakis.rmclean_oncuts)
(in module arrakis.rmsynth_oncuts)
(in module arrakis.utils.io)
(in module arrakis.utils.pipeline)
(in module casda_prepare)
(in module compute_leakage)
(in module fix_src_cat)
(in module tar_cubelets)
TqdmProgressBar (class in arrakis.utils.pipeline)
TqdmToLogger (class in arrakis.logger)
try_mkdir() (in module arrakis.utils.io)
try_symlink() (in module arrakis.utils.io)
U
u (arrakis.rmsynth_oncuts.StokesSpectra attribute)
UltimateHelpFormatter (class in arrakis.logger)
update (arrakis.frion.Prediction attribute)
update_cube() (in module casda_prepare)
update_rmtools_dict() (in module arrakis.rmsynth_oncuts)
upload_image_as_artifact_task() (in module arrakis.utils.pipeline)
V
validate_sbid_field_pair() (in module arrakis.utils.database)
validation_parser() (in module arrakis.validate)
verify_tarball() (in module arrakis.utils.io)
W
wcs (arrakis.validate.BinnedMap attribute)
(arrakis.validate.GriddedMap attribute)
weights (arrakis.linmos.ImagePaths attribute)
workdir_arg_parser() (in module arrakis.utils.pipeline)
worker() (in module arrakis.cutout)
write() (arrakis.logger.TqdmToLogger method)
write_polspec() (in module casda_prepare)
write_votable() (in module arrakis.makecat)
(in module fix_src_cat)
wsclean() (in module arrakis.utils.msutils)
X
x_0 (arrakis.rmsynth_oncuts.StokesIFitResult attribute)
xc (arrakis.validate.BinnedMap attribute)
Y
yc (arrakis.validate.BinnedMap attribute)
yellow (arrakis.logger.CustomFormatter attribute)
yes_or_no() (in module arrakis.utils.meta)
Z
zip_equal() (in module arrakis.utils.meta)